N-(3-Aminopropyl)-N-methylcarbamic acid tert-butyl ester

Conditions: temp:0.00; pressure:0.00; stir:; See reaction.notes.procedure_details.

Procedure: To a stirred solution of N-(3-aminopropyl)-N-methylcarbamic acid tert-butyl ester (2.00 g, 10.6 mmol) and sodium carbonate (2.81 g, 26.6 mmol) in water (7 mL) at 0° C. was added a solution of 9-fluorenylmethyl chloroformate (2.75 g, 10.6 mmol) in 1,4-dioxane (5 mL). The resulting mixture was stirred at room temperature for 2 h and then poured into water (10 mL). This mixture was extracted with diethyl ether (2×50 mL) and the combined organic layers were dried over sodium sulfate, filtered and concentrated under reduced pressure to afford a clear oil. The oil was purified by silica gel flash chromatography (0-70% EtOAc in hexanes) to give the title compound (4.24 g, 77% yield) as a clear oil (product contained a minor impurity, but was used without further purification). This mixture was extracted with diethyl ether (2×50 mL) the combined organic layers were dried over sodium sulfate filtered concentrated under reduced pressure to afford a clear oil The oil was purified by silica gel flash chromatography (0-70% EtOAc in hexanes)

Conditions: temp:0.00; pressure:0.00; stir:; See reaction.notes.procedure_details.

Procedure: To a stirred solution of N-(3-aminopropyl)-N-methylcarbamic acid tert-butyl ester (2.00 g, 10.6 mmol) and sodium carbonate (2.81 g, 26.6 mmol) in water (7 mL) at 0° C. was added a solution of 9-fluorenylmethyl chloroformate (2.75 g, 10.6 mmol) in 1,4-dioxane (5 mL). The resulting mixture was stirred at room temperature for 2 h and then poured into water (10 mL). This mixture was extracted with diethyl ether (2×50 mL) and the combined organic layers were dried over sodium sulfate, filtered and concentrated under reduced pressure to afford a clear oil. The oil was purified by silica gel flash chromatography (0-70% EtOAc in hexanes) to give the title compound (4.24 g, 77% yield) as a clear oil (product contained a minor impurity, but was used without further purification). This mixture was extracted with diethyl ether (2×50 mL) the combined organic layers were dried over sodium sulfate filtered concentrated under reduced pressure to afford a clear oil The oil was purified by silica gel flash chromatography (0-70% EtOAc in hexanes)

Conditions: temp:0.00; pressure:0.00; stir:; See reaction.notes.procedure_details.

Procedure: To a stirred solution of N-(3-aminopropyl)-N-methylcarbamic acid tert-butyl ester (2.00 g, 10.6 mmol) and sodium carbonate (2.81 g, 26.6 mmol) in water (7 mL) at 0° C. was added a solution of 9-fluorenylmethyl chloroformate (2.75 g, 10.6 mmol) in 1,4-dioxane (5 mL). The resulting mixture was stirred at room temperature for 2 h and then poured into water (10 mL). This mixture was extracted with diethyl ether (2×50 mL) and the combined organic layers were dried over sodium sulfate, filtered and concentrated under reduced pressure to afford a clear oil. The oil was purified by silica gel flash chromatography (0-70% EtOAc in hexanes) to give the title compound (4.24 g, 77% yield) as a clear oil (product contained a minor impurity, but was used without further purification). This mixture was extracted with diethyl ether (2×50 mL) the combined organic layers were dried over sodium sulfate filtered concentrated under reduced pressure to afford a clear oil The oil was purified by silica gel flash chromatography (0-70% EtOAc in hexanes)

Conditions: temp:0.00; pressure:0.00; stir:; See reaction.notes.procedure_details.

Procedure: To a stirred solution of N-(3-aminopropyl)-N-methylcarbamic acid tert-butyl ester (2.00 g, 10.6 mmol) and sodium carbonate (2.81 g, 26.6 mmol) in water (7 mL) at 0° C. was added a solution of 9-fluorenylmethyl chloroformate (2.75 g, 10.6 mmol) in 1,4-dioxane (5 mL). The resulting mixture was stirred at room temperature for 2 h and then poured into water (10 mL). This mixture was extracted with diethyl ether (2×50 mL) and the combined organic layers were dried over sodium sulfate, filtered and concentrated under reduced pressure to afford a clear oil. The oil was purified by silica gel flash chromatography (0-70% EtOAc in hexanes) to give the title compound (4.24 g, 77% yield) as a clear oil (product contained a minor impurity, but was used without further purification). This mixture was extracted with diethyl ether (2×50 mL) the combined organic layers were dried over sodium sulfate filtered concentrated under reduced pressure to afford a clear oil The oil was purified by silica gel flash chromatography (0-70% EtOAc in hexanes)

Conditions: temp:0.00; pressure:0.00; stir:; See reaction.notes.procedure_details.

Procedure: Acetonitrile (16.0 mL) was added to a mixture of 3-bromo-imidazo[1,2-b]pyridazin-6-one (344.3 mg, 1.6 mmol) and (benzotriazol-1-yloxy)tris(dimethylamino)phosphonium hexafluorophosphate (BOP reagent) [56602-33-6], the mixture allowed to stir to effect dissolution. A solution of (3-amino-propyl)-methyl-carbamic acid tert-butyl ester [150349-36-3] (0.8 g, 3.98 mmol) and 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) [6674-22-2] (2.4 mL, 2.4 mmol) in DMF (4.0 mL) was added and the reaction allowed to stir at ambient temperature for 3d. The reaction solution was partitioned between brine and ethyl acetate, dried (MgSO4), and flash chromatographed (silica gel, eluted with 10% (v/v) 2-propanol/ethyl acetate) to provide [3-(3-bromo-imidazo[1,2-b]pyridazin-6-ylamino)-propyl]-methyl-carbamic acid tert-butyl ester as 0.4 g of clear yellow oil. LRMS (ESI) m/z 384.1/386.1 [(M+H)]+, calc'd for C16H22BrN6O2: 384.28. dissolution The reaction solution was partitioned between brine and ethyl acetate dried (MgSO4), and flash chromatographed (silica gel, eluted with 10% (v/v) 2-propanol/ethyl acetate)

Conditions: temp:0.00; pressure:0.00; stir:; See reaction.notes.procedure_details.

Procedure: Acetonitrile (16.0 mL) was added to a mixture of 3-bromo-imidazo[1,2-b]pyridazin-6-one (344.3 mg, 1.6 mmol) and (benzotriazol-1-yloxy)tris(dimethylamino)phosphonium hexafluorophosphate (BOP reagent) [56602-33-6], the mixture allowed to stir to effect dissolution. A solution of (3-amino-propyl)-methyl-carbamic acid tert-butyl ester [150349-36-3] (0.8 g, 3.98 mmol) and 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) [6674-22-2] (2.4 mL, 2.4 mmol) in DMF (4.0 mL) was added and the reaction allowed to stir at ambient temperature for 3d. The reaction solution was partitioned between brine and ethyl acetate, dried (MgSO4), and flash chromatographed (silica gel, eluted with 10% (v/v) 2-propanol/ethyl acetate) to provide [3-(3-bromo-imidazo[1,2-b]pyridazin-6-ylamino)-propyl]-methyl-carbamic acid tert-butyl ester as 0.4 g of clear yellow oil. LRMS (ESI) m/z 384.1/386.1 [(M+H)]+, calc'd for C16H22BrN6O2: 384.28. dissolution The reaction solution was partitioned between brine and ethyl acetate dried (MgSO4), and flash chromatographed (silica gel, eluted with 10% (v/v) 2-propanol/ethyl acetate)

Conditions: temp:0.00; pressure:0.00; stir:; See reaction.notes.procedure_details.

Procedure: Prepared as in example 5.6.3 from 1-[5-(6-fluoro-imidazo[1,2-b]pyridazine-3-yl)-thiophen-2-yl]-ethanone (50 mg, 0.2 mmol) and N-(3-aminopropyl)-N-methylcarbamic acid tert-butyl ester [150349-36-3] (72 mg, 0.4 mmol) and deprotected with anhydrous HCl in methanol. Purification by preparative RP-HPLC provided 1-{5-[6-(3-methylamino-propylamino)-imidazo[1,2-b]pyridazin-3-yl]-thiophen-2-yl}-ethanone diacetate as a yellow solid. 1H NMR (400 MHz, METHANOL-d4) δ ppm 1.92-1.96 (m, 5H) 2.24 (t, J=7.45 Hz, 1H) 2.62 (s, 2H) 2.80 (s, 2H) 3.23-3.31 (m, 2H) 3.61 (t, J=7.33 Hz, 1H) 6.79 (d, J=9.60 Hz, 1H) 7.70-7.74 (m, 1H) 7.92 (d, J=4.04 Hz, 1H) 8.06 (br. s., 1H). LRMS (ESI) m/z 330.1 [(M+H)]+, calc'd for C16H19N5OS: 329.43. Purification by preparative RP-HPLC

Conditions: temp:0.00; pressure:0.00; stir:; See reaction.notes.procedure_details.

Procedure: Cesium carbonate [534-17-8] (125 mg, 0.4 mmol) was added to a solution of 1-[5-(6-fluoro-imidazo[1,2-b]pyridazin-3-yl)-thiophen-2-yl]-ethanone (50 mg, 0.2 mmol) and N-(3-aminopropyl)-N-methylcarbamic acid tert-butyl ester [150349-36-3] (72 mg, 0.4 mmol) in N,N-dimethylformamide (1.5 mL) and stirred overnight at ambient temperature then partitioned between ethyl acetate and water. The organic extract was evaporated and product isolated by preparative RP-HPLC to provide {3-[3-(5-acetyl-thiophen-2-yl)-imidazo[1,2-b]pyridazin-6-ylamino]-propyl}-methyl-carbamic acid tert-butyl ester as a yellow oil. 1H NMR (400 MHz, METHANOL-d4) δ ppm 1.33-1.49 (m, 9H) 2.04 (d, J=11.87 Hz, 2H) 2.59 (s, 3H) 2.91 (s, 3H) 3.35-3.53 (m, 4H) 4.62 (s, 1H) 6.75 (d, J=9.60 Hz, 1H) 7.64-7.75 (m, 2H) 7.87 (d, J=4.04 Hz, 1H) 7.98 (s, 1H). LRMS (ESI) m/z 430.2 [(M+H)]+, calc'd for C21H27N5O3S: 429.55. then partitioned between ethyl acetate and water The organic extract was evaporated product isolated by preparative RP-HPLC

Conditions: temp:0.00; pressure:0.00; stir:; See reaction.notes.procedure_details.

Procedure: Combined 6-(4-(4-cyanophenyl)-5-hydroxy-1H-pyrazol-1-yl)nicotinic acid (200 mg, 0.65 mmol) HATU (372 mg, 0.98 mmol), and Et3N (198 mg, 1.96 mmol) in DMF (3.0 mL). The mixture was stirred at room temperature for 0.5 hour, then tert-butyl (3-aminopropyl)(methyl)carbamate (147.39 mg, 0.79 mmol) was added. The mixture was stirred overnight at room temperature. The reaction mixture was purified by preparative HPLC to give tert-butyl (3-(6-(4-(4-cyanophenyl)-5-hydroxy-1H-pyrazol-1-yl)nicotinamido)propyl)(methyl)carbamate (150 mg, 48%). The mixture was stirred overnight at room temperature The reaction mixture was purified by preparative HPLC

Conditions: temp:0.00; pressure:0.00; stir:; See reaction.notes.procedure_details.

Procedure: Combined 6-(4-(4-cyanophenyl)-5-hydroxy-1H-pyrazol-1-yl)nicotinic acid (200 mg, 0.65 mmol) HATU (372 mg, 0.98 mmol), and Et3N (198 mg, 1.96 mmol) in DMF (3.0 mL). The mixture was stirred at room temperature for 0.5 hour, then tert-butyl(3-aminopropyl)(methyl)carbamate (147.39 mg, 0.79 mmol) was added. The mixture was stirred overnight at room temperature. The reaction mixture was purified by preparative HPLC to give tert-butyl (3-(6-(4-(4-cyanophenyl)-5-hydroxy-1H-pyrazol-1-yl)nicotinamido)propyl)(methyl)carbamate (150 mg, 48%). The mixture was stirred overnight at room temperature The reaction mixture was purified by preparative HPLC

Conditions: temp:0.01; pressure:0.00; stir:; See reaction.notes.procedure_details.

Procedure: HATU (0.073 g, 0.193 mmol) was added into a mixture of methyl 4-(4-fluoro-2-(tetrahydro-2H-pyran-4-yloxy)phenylamino)-5-methylthieno[2,3-d]pyrimidine-6-carboxylate (0.07 g, 0.175 mmol) and Hünig's base (30 μL, 0.175 mmol) in DMF (2.0 mL) at 0° C. The reaction mixture was stirred at 0° C. for 0.5 hours. tert-Butyl 3-aminopropyl(methyl)carbamate (0.164 g, 0.875 mmol) was added, the coolant removed and the reaction stirred at ambient temperature overnight. The product was recrystallised from EtOAc to yield colourless solid. The solid was dissolved in DCM (2.0 mL), treated with trifluoroacetic acid (0.50 mL) and the reaction stirred at ambient temperature for 2 hours. The reaction mixture was applied to an SCX cartridge and eluted with MeOH (30 mL) followed by ammonia in MeOH. Evaporation of appropriate fractions gave the product as a colourless solid (0.042 g, 50%). the coolant removed the reaction stirred at ambient temperature overnight The product was recrystallised from EtOAc to yield colourless solid the reaction stirred at ambient temperature for 2 hours eluted with MeOH (30 mL) Evaporation of appropriate fractions

Conditions: temp:0.01; pressure:0.00; stir:; See reaction.notes.procedure_details.

Procedure: HATU (0.073 g, 0.193 mmol) was added into a mixture of methyl 4-(4-fluoro-2-(tetrahydro-2H-pyran-4-yloxy)phenylamino)-5-methylthieno[2,3-d]pyrimidine-6-carboxylate (0.07 g, 0.175 mmol) and Hünig's base (30 μL, 0.175 mmol) in DMF (2.0 mL) at 0° C. The reaction mixture was stirred at 0° C. for 0.5 hours. tert-Butyl 3-aminopropyl(methyl)carbamate (0.164 g, 0.875 mmol) was added, the coolant removed and the reaction stirred at ambient temperature overnight. The product was recrystallised from EtOAc to yield colourless solid. The solid was dissolved in DCM (2.0 mL), treated with trifluoroacetic acid (0.50 mL) and the reaction stirred at ambient temperature for 2 hours. The reaction mixture was applied to an SCX cartridge and eluted with MeOH (30 mL) followed by ammonia in MeOH. Evaporation of appropriate fractions gave the product as a colourless solid (0.042 g, 50%). the coolant removed the reaction stirred at ambient temperature overnight The product was recrystallised from EtOAc to yield colourless solid the reaction stirred at ambient temperature for 2 hours eluted with MeOH (30 mL) Evaporation of appropriate fractions